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CATCh – an ensemble classifier for chimera detection in 16S rRNA sequencing studies

CATCh – an ensemble classifier for chimera detection in 16S rRNA sequencing studies

IRcall and IRclassifier – two methods for flexible detection of intron retention events from RNA-Seq data - The emergence of next-generation RNA sequencing (RNA-Seq) provides tremendous opportunities for researchers to analyze alternative splicing on a genome-wide scale. However, accurate detection of intron retention (IR) events from RNA-Seq data has remained an unresolved challenge in next-generation sequencing (NGS) studies....

IRcall and IRclassifier – two methods for flexible detection of intron retention events from RNA-Seq data - The emergence of next-generation RNA sequencing (RNA-Seq) provides tremendous opportunities for researchers to analyze alternative splicing on a genome-wide scale. However, accurate detection of intron retention (IR) events from RNA-Seq data has remained an unresolved challenge in next-generation sequencing (NGS) studies....

In this study, researchers from the University of Michigan present a method to utilize GPMDB identification frequencies and RNA-Seq transcri...

In this study, researchers from the University of Michigan present a method to utilize GPMDB identification frequencies and RNA-Seq transcri...

A new method for identifying rare cell types by single-cell mRNA sequencing - Scientists of Utrecht University and the Hubrecht Institute (Utrecht, the Netherlands) developed a new method for identifying rare cell types by single-cell mRNA sequencing. The newly developed algorithm, called RaceID, is very useful for identifying rare cell types in normal and diseased tissue. The research is published, ahead of print, on the website of Nature the 19th of August...

A new method for identifying rare cell types by single-cell mRNA sequencing - Scientists of Utrecht University and the Hubrecht Institute (Utrecht, the Netherlands) developed a new method for identifying rare cell types by single-cell mRNA sequencing. The newly developed algorithm, called RaceID, is very useful for identifying rare cell types in normal and diseased tissue. The research is published, ahead of print, on the website of Nature the 19th of August...

PrimerView – forward and reverse primer design from multi-sequence datasets - High-throughput primer design is routinely performed in a wide number of molecular applications including genotyping specimens using traditional PCR techniques as well as assembly PCR, nested PCR, and primer walking experiments. Batch primer design is also required in validation experiments from RNA-seq transcriptome sequencing projects, as well as in generating probes for microarray experiments.  The growing…

PrimerView – forward and reverse primer design from multi-sequence datasets - High-throughput primer design is routinely performed in a wide number of molecular applications including genotyping specimens using traditional PCR techniques as well as assembly PCR, nested PCR, and primer walking experiments. Batch primer design is also required in validation experiments from RNA-seq transcriptome sequencing projects, as well as in generating probes for microarray experiments. The growing…

Researchers at the University of North Carolina, Chapel Hill found that chimeric RNA-cDNA fragments can also be detected at 5′ end stem-loop...

Researchers at the University of North Carolina, Chapel Hill found that chimeric RNA-cDNA fragments can also be detected at 5′ end stem-loop...

researchers at AgroParisTech propose to use the Pruned Dynamic Programming algorithm for Seq-experiment outputs. This requires the adaptatio...

researchers at AgroParisTech propose to use the Pruned Dynamic Programming algorithm for Seq-experiment outputs. This requires the adaptatio...

Single cell RNA sequencing reveals unknown cell types in the brain - Using a process known as single cell sequencing, scientists at Karolinska Institutet have produced a detailed map of cortical cell types and the genes active within them. The study, which is published in the journal ‘Science‘, marks the first time this method of analysis has been used on such a large scale on such complex tissue. The team studied over three thousand cells, one at a time...

Single cell RNA sequencing reveals unknown cell types in the brain - Using a process known as single cell sequencing, scientists at Karolinska Institutet have produced a detailed map of cortical cell types and the genes active within them. The study, which is published in the journal ‘Science‘, marks the first time this method of analysis has been used on such a large scale on such complex tissue. The team studied over three thousand cells, one at a time...

SnowyOwl is a new gene prediction pipeline that uses RNA-Seq data to train and provide hints for the generation of Hidden Markov Model (HMM)...

SnowyOwl is a new gene prediction pipeline that uses RNA-Seq data to train and provide hints for the generation of Hidden Markov Model (HMM)...

Researchers at Xi’an Jiaotong-Liverpool University have previously developed an R/Bioconductor package ‘exomePeak’ for detecting RNA methyla...

Researchers at Xi’an Jiaotong-Liverpool University have previously developed an R/Bioconductor package ‘exomePeak’ for detecting RNA methyla...

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