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CATCh – an ensemble classifier for chimera detection in 16S rRNA sequencing studies

CATCh – an ensemble classifier for chimera detection in rRNA sequencing studies

IRcall and IRclassifier – two methods for flexible detection of intron retention events from RNA-Seq data - The emergence of next-generation RNA sequencing (RNA-Seq) provides tremendous opportunities for researchers to analyze alternative splicing on a genome-wide scale. However, accurate detection of intron retention (IR) events from RNA-Seq data has remained an unresolved challenge in next-generation sequencing (NGS) studies....

The emergence of next-generation RNA sequencing (RNA-Seq) provides tremendous opportunities for researchers to analyze alternative splicing on a genome-wide

A regression-based differential expression detection algorithm for studies with ultra-low sample size - Global gene expression analysis using microarrays and, more recently, RNA-seq, has allowed investigators to understand biological processes at a system level. However, the identification of differentially expressed genes in experiments with small sample size, high dimensionality, and high variance remains challenging, limiting the usability of these tens of thousands of publicly…

Global gene expression analysis using microarrays and, more recently, RNA-seq, has allowed investigators to understand biological processes at a system level.

RNA-Seq is a powerful tool used to obtain in-depth information on expression profiling, gene annotation, and transcript discovery. With the ...

RNA-Seq is a powerful tool used to obtain in-depth information on expression profiling, gene annotation, and transcript discovery.

Analysis example for RNA-Seq experiments using the bioconductor package edgeR - Overview  This is a script that will do differential gene expression (DGE) analysis for RNA-seq experiments using the bioconductor package edgeR.  Project Details  To give background on this project, this is a RNA-seq project that is being done in planarian, Schmidtea mediterranea, a flatworm that has remarkable regeneration properties. This project is being done in the lab of Alejandro Sanchez Alvarado, an…

from RPubs by Alex Chitsazan Overview This is a script that will do differential gene expression (DGE) analysis for RNA-seq experiments using the bioconductor

To get novel insights into the mechanisms of prostate adenocarcinoma by  leveraging next generation sequencing (NGS) data, particularly huma...

To get novel insights into the mechanisms of prostate adenocarcinoma by leveraging next generation sequencing (NGS) data, particularly huma.

RNA-Seq – A Tutorial | RNA-Seq Blog

A Brief History of Sequencing and Gene Expression. Tag Based Sequencing Approaches Serial Analysis of Gene Expression (SAGE) Cap Analysis of Gene Expression

ViennaNGS – A toolbox for building efficient next- generation sequencing analysis pipelines - Recent achievements in next-generation sequencing (NGS) technologies lead to a high demand for reuseable software components to easily compile customized analysis workflows for big genomics data. Researchers at the University of Vienna present ViennaNGS, an integrated collection of Perl modules focused on building efficient pipelines for NGS data processing. It comes with functionality for…

ecent achievements in next-generation sequencing (NGS) technologies lead to a high demand for reuseable software components to easily compile customized

A new method for identifying rare cell types by single-cell mRNA sequencing - Scientists of Utrecht University and the Hubrecht Institute (Utrecht, the Netherlands) developed a new method for identifying rare cell types by single-cell mRNA sequencing. The newly developed algorithm, called RaceID, is very useful for identifying rare cell types in normal and diseased tissue. The research is published, ahead of print, on the website of Nature the 19th of August...

Scientists of Utrecht University and the Hubrecht Institute (Utrecht, the Netherlands) developed a new method for identifying rare cell types by single-cell

from Genetic Engineering News - Market and Technology Analysis – Next-Generation Sequencing Market Trends

from Genetic Engineering News - Market and Technology Analysis – Next-Generation Sequencing Market Trends

Defining cell lineages by single-cell RNA-Seq - Researchers at the Francis Crick Institute provide fundamental insights into early human development by single-cell RNA-sequencing of human and mouse preimplantation embryos. They elucidate conserved transcriptional programs along with those that are human-specific and validate their RNA-sequencing findings at the protein level. They identified several genes exclusively expressed in the human pluripotent epiblast including the transcription…

Researchers at the Francis Crick Institute provide fundamental insights into early human development by single-cell RNA-sequencing of human and mouse

Normalization and Differential Expression in RNA-Seq - Sandrine Dudoit, talks to the Toronto Bioinformatics User Group about Normalization and Differential Expression in RNA-Seq. Find out more about TorBUG at http://www.torbug.org.

Normalization and Differential Expression in RNA-Seq

RNA-Seq Assembly – Fundamental Limits, Algorithms and Software | RNA-Seq Blog

RNA-Seq Assembly – Fundamental Limits, Algorithms and Software

A platform for combining the results of WES and RNA seq analysis | RNA-Seq Blog

Naomi Thomson - A platform for combining the results of WES and RNA seq analysis

Integrating transcriptome and genome sequencing | RNA-Seq Blog

Integrating transcriptome and genome sequencing

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