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CATCh – an ensemble classifier for chimera detection in 16S rRNA sequencing studies

CATCh – an ensemble classifier for chimera detection in 16S rRNA sequencing studies

StarScan – a web server for scanning small RNA targets from degradome sequencing data - Endogenous small non-coding RNAs (sRNAs), including microRNAs, PIWI-interacting RNAs and small interfering RNAs, play important gene regulatory roles in animals and plants by pairing to the protein-coding and non-coding transcripts. However, computationally assigning these various sRNAs to their regulatory target genes remains technically challenging. Recently, a high-throughput degradome sequencing…

StarScan – a web server for scanning small RNA targets from degradome sequencing data - Endogenous small non-coding RNAs (sRNAs), including microRNAs, PIWI-interacting RNAs and small interfering RNAs, play important gene regulatory roles in animals and plants by pairing to the protein-coding and non-coding transcripts. However, computationally assigning these various sRNAs to their regulatory target genes remains technically challenging. Recently, a high-throughput degradome sequencing…

CIRI – de novo circular RNA identification - Recent studies reveal that circular RNAs (circRNAs) are a novel class of abundant, stable and ubiquitous noncoding RNA molecules in animals. A comprehensive detection of circRNAs from high-throughput transcriptome data is an initial and crucial step to study their biogenesis and function. Here, researchers from the Beijing Institutes of Life Science present a novel chiastic clipping signal based algorithm...

CIRI – de novo circular RNA identification - Recent studies reveal that circular RNAs (circRNAs) are a novel class of abundant, stable and ubiquitous noncoding RNA molecules in animals. A comprehensive detection of circRNAs from high-throughput transcriptome data is an initial and crucial step to study their biogenesis and function. Here, researchers from the Beijing Institutes of Life Science present a novel chiastic clipping signal based algorithm...

Oscope – transcriptional dynamics of oscillating genes in single-cell RNA-Seq data - Oscillatory gene expression is fundamental to development, but technologies for monitoring expression oscillations are limited. Researchers at the University of Wisconsin-Madison have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population...

Oscope – transcriptional dynamics of oscillating genes in single-cell RNA-Seq data - Oscillatory gene expression is fundamental to development, but technologies for monitoring expression oscillations are limited. Researchers at the University of Wisconsin-Madison have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population...

Proteomics Informed by Transcriptomics - With the recent advent of RNA-seq technology the proteomics community has begun to generate sample-specific protein databases for peptide and protein identification, an approach we call proteomics informed by transcriptomics (PIT). This approach has gained a lot of interest, particularly among researchers who work with non-model organisms or with particularly dynamic proteomes such as those observed in developmental biology and host-pathogen studies..

Proteomics Informed by Transcriptomics - With the recent advent of RNA-seq technology the proteomics community has begun to generate sample-specific protein databases for peptide and protein identification, an approach we call proteomics informed by transcriptomics (PIT). This approach has gained a lot of interest, particularly among researchers who work with non-model organisms or with particularly dynamic proteomes such as those observed in developmental biology and host-pathogen studies..

Top U.S.A. College Grants: Student Grants for College in U.S.A.. U.S.A. college grants are categorized by type and need. We encourage students seeking collge grants to apply early, and also to always file for a Pell Grant. The Pell Grant can only be filed after your submit the necessary FAFSA form. http://www.naas.org/scholarship/financial-aid/college-grants/

Top U.S.A. College Grants: Student Grants for College in U.S.A.. U.S.A. college grants are categorized by type and need. We encourage students seeking collge grants to apply early, and also to always file for a Pell Grant. The Pell Grant can only be filed after your submit the necessary FAFSA form. http://www.naas.org/scholarship/financial-aid/college-grants/

TranscriptCoder – Proteomic validation of transcript isoforms, including those assembled from RNA-Seq data

TranscriptCoder – Proteomic validation of transcript isoforms, including those assembled from RNA-Seq data

Researchers at Xi’an Jiaotong-Liverpool University have previously developed an R/Bioconductor package ‘exomePeak’ for detecting RNA methyla...

Researchers at Xi’an Jiaotong-Liverpool University have previously developed an R/Bioconductor package ‘exomePeak’ for detecting RNA methyla...

IRcall and IRclassifier – two methods for flexible detection of intron retention events from RNA-Seq data - The emergence of next-generation RNA sequencing (RNA-Seq) provides tremendous opportunities for researchers to analyze alternative splicing on a genome-wide scale. However, accurate detection of intron retention (IR) events from RNA-Seq data has remained an unresolved challenge in next-generation sequencing (NGS) studies....

IRcall and IRclassifier – two methods for flexible detection of intron retention events from RNA-Seq data - The emergence of next-generation RNA sequencing (RNA-Seq) provides tremendous opportunities for researchers to analyze alternative splicing on a genome-wide scale. However, accurate detection of intron retention (IR) events from RNA-Seq data has remained an unresolved challenge in next-generation sequencing (NGS) studies....

In an attempt to find breast cancer tissue and respective adjacent normal tissue were studied for the expression of lincRNAs by RNA-seq. Amo...

In an attempt to find breast cancer tissue and respective adjacent normal tissue were studied for the expression of lincRNAs by RNA-seq. Amo...

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